PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G195400.1

Common Name

B456_005G195400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 163aa MW: 18127.7 Da PI: 9.8526

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G195400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.8	4.8e-11	15	54	1	41
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41 lp GfrFhPtdeelvv+yL +kv + +l++ ++i+ev i+k Gorai.005G195400.1 15 LPHGFRFHPTDEELVVQYLGRKVLAWPLPA-SIIPEVMITK 54 699************************999.7899998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-12	8	52	IPR003441	NAC domain
Pfam	PF02365	2.6E-8	16	116	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MMGKLNFVIN GVLRLPHGFR FHPTDEELVV QYLGRKVLAW PLPASIIPEV MITKQILGTC 60 QNHVVAVENW VLCRIFLKKR SGGATKNEDG SLQSSNEKGV GKARRKSPVF YEFLSKERTN 120 LNPAPTSSSS CSSGITRVSN NDTDDHEESS SCNSFPYFRR KP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2864	1e-115	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC110642	1e-114	KC110642.1 Gossypium hirsutum NAC protein 7 (NAC7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016666241.1	3e-56	PREDICTED: NAC domain-containing protein 83-like
Refseq	XP_017643855.1	3e-56	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A0D2NEI0	1e-117	A0A0D2NEI0_GOSRA; Uncharacterized protein
STRING	Gorai.005G195400.1	1e-118	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	4e-19	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Gorai.005G195400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]