PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G195400.2
Common NameB456_005G195400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 145aa    MW: 16345.3 Da    PI: 10.3521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G195400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.56.1e-11127102128
                 NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                         +kktLvf++g+ p+g++tdW+mheyrl
  Gorai.005G195400.2   1 MKKTLVFFRGKPPQGTRTDWIMHEYRL 27 
                         8************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.299160IPR003441NAC domain
SuperFamilySSF1019416.67E-15160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKKTLVFFRG KPPQGTRTDW IMHEYRLVTA DTYNAPHKKN QTQNHVVAVE NWVLCRIFLK  60
KRSGGATKNE DGSLQSSNEK GVGKARRKSP VFYEFLSKER TNLNPAPTSS SSCSSGITRV  120
SNNDTDDHEE SSSCNSFPYF RRKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.28641e-176flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106421e-175KC110642.1 Gossypium hirsutum NAC protein 7 (NAC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666241.12e-90PREDICTED: NAC domain-containing protein 83-like
RefseqXP_017643855.12e-90PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A0D2RNA91e-104A0A0D2RNA9_GOSRA; Uncharacterized protein
STRINGGorai.005G195300.13e-81(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-25NAC domain containing protein 83
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]