PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G206800.1
Common NameB456_005G206800, LOC105794922
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 279aa    MW: 31767.3 Da    PI: 5.9814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G206800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
  Gorai.005G206800.1 14 KGTWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                        799*****************99************************97 PP
2Myb_DNA-binding521.6e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ ++eE+e +++++  lG++ W++Ia+ ++ gRt++++k++w++ 
  Gorai.005G206800.1  67 RGSYSKEEEETIIRLHDSLGNR-WSAIAAQLP-GRTDNEVKNHWHTT 111
                         7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-23563IPR009057Homeodomain-like
PROSITE profilePS5129415.994961IPR017930Myb domain
SuperFamilySSF466896.64E-2911108IPR009057Homeodomain-like
SMARTSM007171.2E-81363IPR001005SANT/Myb domain
PfamPF002491.8E-131461IPR001005SANT/Myb domain
CDDcd001671.45E-81661No hitNo description
PROSITE profilePS5129424.75962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2564116IPR009057Homeodomain-like
SMARTSM007175.5E-1666114IPR001005SANT/Myb domain
PfamPF002494.3E-1567111IPR001005SANT/Myb domain
CDDcd001677.46E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVRTPCCDKT GLRKGTWTPE EDRKLMAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNIKRGSY SKEEEETIIR LHDSLGNRWS AIAAQLPGRT DNEVKNHWHT TLKRRFKHKP  120
SAAAKDGKDN SSQDPKLRRG TSREKEETKL NDVDHLLISS PNPPLILESS LSSQQPASSD  180
QNSSITTDNT VVTSKLDSGS DDNSTTTNTN TDIHTDTLLE AYEAESSNFW TEPFFSDINY  240
MWSDVSSVVP YEADQFPLLD GEILYPFDFY DQLQGLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479764.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0D2RIS20.0A0A0D2RIS2_GOSRA; Uncharacterized protein
STRINGGorai.005G206800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-59myb domain protein 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]