PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G226000.6
Common NameB456_005G226000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 223aa    MW: 24460 Da    PI: 9.346
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G226000.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.26.4e-15184218133
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                         C++Cg  +  Tp +Rrgp g++tLCnaCGl+++ k
  Gorai.005G226000.6 184 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANK 218
                         ********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.5E-65085IPR010399Tify domain
PROSITE profilePS5132012.2585085IPR010399Tify domain
PfamPF062001.9E-95484IPR010399Tify domain
PfamPF062033.0E-15118160IPR010402CCT domain
PROSITE profilePS5101712.818118160IPR010402CCT domain
SMARTSM004011.1E-4178222IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-9179217No hitNo description
Gene3DG3DSA:3.30.50.101.1E-12182218IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.05E-11183218No hitNo description
PfamPF003201.6E-12184218IPR000679Zinc finger, GATA-type
PROSITE patternPS003440184211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA  60
FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA  120
SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV  180
LRSCQHCGIN EKLTPAMRRG PAGPRTLCNA CGLMWANKVG VE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633519.11e-162PREDICTED: GATA transcription factor 19-like isoform X1
SwissprotB8AR305e-55GAT19_ORYSI; GATA transcription factor 19
TrEMBLA0A0D2SLW61e-164A0A0D2SLW6_GOSRA; Uncharacterized protein
STRINGGorai.005G226000.11e-161(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.16e-45ZIM-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]