PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G231900.1

Common Name

B456_005G231900, LOC105795179

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 268aa MW: 29493.7 Da PI: 4.5941

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G231900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.5e-10	196	236	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Gorai.005G231900.1 196 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 236 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-14	187	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-12	191	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-11	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.55E-12	195	240	No hit	No description
Pfam	PF00010	7.3E-8	196	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDSMGTLLEG DWSCFSGMYT TDQEADFMAQ LLSNCPQLPD IDMSNYLSDS NPVFVTNNSP 60 ISMDFCMEDG TKTSFFLVEP DDCLDPEMGK NGNVEKEPKP EPEKKSSNKR SRNSGDVHVQ 120 KSKRNGRSKK NQTIAANDDE DGNGGLNGQS WASCSSEDDS NGGASSGSKG ETTLNLNGKT 180 RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK 240 LLSSDDLWMY APIAYNGMDI GIDLKRT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583842	7e-96	JX583842.1 Gossypium hirsutum clone NBRI_GE16990 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480143.1	0.0	PREDICTED: transcription factor bHLH84
Swissprot	Q7XHI9	2e-62	BH084_ARATH; Transcription factor bHLH84
TrEMBL	A0A0D2NHC2	0.0	A0A0D2NHC2_GOSRA; Uncharacterized protein
STRING	Gorai.005G231900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	3e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G231900.1
Entrez Gene	105795179

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]