PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G232500.2

Common Name

B456_005G232500, LOC105795188

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 207aa MW: 21475.1 Da PI: 4.7975

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G232500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.2	2.1e-17	2	94	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++ +r+ ra +Pv+Gavg++++++++++ Gorai.005G232500.2 2 SCNGCRILRKGCSENCMLRQSLqcienPQAQAHATVFVAKFFGRAGLMSFLSSVASPQRPV----------GRAINPVSGAVGLLWTGNWNVC 84 6********************99*****************************995..........89**************** PP DUF260 89 qlkaelallk 98 q++++++l++ Gorai.005G232500.2 85 QSAVQTVLQG 94 *9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.136	1	97	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-13	2	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSCNGCRILR KGCSENCMLR QSLQCIENPQ AQAHATVFVA KFFGRAGLMS FLSSVASPQR 60 PVGRAINPVS GAVGLLWTGN WNVCQSAVQT VLQGGTLQPL PEFSGGVSGS DFEDVGETVG 120 VGGGGGAGGP CIQSGGFVDV VECKASDLNL CLMIGDDDRA VQRRRESTSS EESETTTLGS 180 RFSGDGNSSN DSCGADGERK LLRLFI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX581778	2e-89	JX581778.1 Gossypium hirsutum clone NBRI_GE14483 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480163.1	1e-147	PREDICTED: LOB domain-containing protein 38-like isoform X2
Swissprot	Q9SN23	4e-50	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A0D2PY71	1e-146	A0A0D2PY71_GOSRA; Uncharacterized protein
STRING	Gorai.005G232500.1	1e-118	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-52	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Gorai.005G232500.2
Entrez Gene	105795188

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]