PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G234300.1

Common Name

B456_005G234300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-PHD

Protein Properties

Length: 941aa MW: 103558 Da PI: 4.7969

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G234300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.3	1.9e-11	867	910	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++ ++L e F++n+yp+++++e+L k l++t rqV+ WF N R Gorai.005G234300.1 867 ETEKQRLCESFRENQYPDRATKERLGKDLDMTFRQVSKWFENAR 910 567899************************************99 PP
2	PHD	39.2	1.6e-13	502	556	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l +e++p g wlC+ C + Gorai.005G234300.1 502 FCAKCGSkdLSANNDIILCDGvCDRGFHQYCLQPPLLKEDIPPGdeGWLCPGCYC 556 699*977677****77****************9999*****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	9.97E-15	492	560	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.3E-13	499	555	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.941	500	557	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	9.1E-10	502	555	IPR001965	Zinc finger, PHD-type
CDD	cd15504	1.72E-26	502	554	No hit	No description
Pfam	PF00628	3.8E-11	502	556	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	503	554	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	3.8E-12	844	910	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-10	855	913	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.758	856	916	IPR001356	Homeobox domain
SMART	SM00389	3.4E-7	859	920	IPR001356	Homeobox domain
CDD	cd00086	1.90E-9	863	910	No hit	No description
Pfam	PF00046	6.0E-9	867	910	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MLIFFIASFL PDMINVEHMG VSPPETKSEK GNHFAPEETT SEQAHELGSE YLHTELSKNK 60 HPCGYAITRN ESAETATGVS FSDIHESSSG YVDKKSPPEH LGLLPKYASE HNPPDNSFCH 120 QETVSGMTHE YGSGYVHETS EKKHQPGSDI VQNNLEEACT LVCGLPAEHL RPCSKDFSKN 180 ARTESLRVLP EDSSKCTQID QLSCLQLGSV EPTAAFGSIN TCKELGEPTE QQQQLGSESL 240 SNGIGKSPTA TSSNAFYQAL ELYPEVMNQS NCGERFQSPS EGASIVSQTG KSYLVDPLGL 300 PPGFESGNSC VQQPRLHSED MARSSGVEQH EATPKNLLEN SVQGRDGESS KTRKKYTPRP 360 LTSSDRVLRS KSQEKSKASE LSNNITDIGS SEQQKGRNRN KMIEKREVSD EYSRIRSHLR 420 YLVNRINYER SLIAAYSTEG WKGLSLEKLK PEKELQRATS EILRRKLKIR DLFQRIDSLC 480 AEGRLPESLF DSKGEIDSED IFCAKCGSKD LSANNDIILC DGVCDRGFHQ YCLQPPLLKE 540 DIPPGDEGWL CPGCYCKLFC IELVNESQGT SFCLADSWEK VFPEAVVAAG GQNQDPNLEL 600 PSDDSDDSDY NAENSEPDEK DQGDESSSDE SDFTCSSEEL EVPRNVDPCL GLLSDDSEDD 660 NYDPDGPDHD NVAEPESSTS DFTSDSEDLG GMLKDNSSSP KDEGPVSNIG STDSKGQKPK 720 LGGNESRSDK LSSIMDSASG QDGTAVSKKR SSEKLDYKKL YDETYVNFPS SSSDDEDWSD 780 TIAPRKRKRH AAGASSAPEN GNASSSRSVS ISEGSKLNPE HKLRRNMRQN SKFKDTNLSP 840 AESKGGTSVS GSSGKKAGSS THRRLGETEK QRLCESFREN QYPDRATKER LGKDLDMTFR 900 QVSKWFENAR WSFNHPTSNQ ETTAKRVAEN AITSVVPKKN *

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MLIFFIASFL PDMINVEHMG VSPPETKSEK GNHFAPEETT SEQAHELGSE YLHTELSKNK  60
HPCGYAITRN ESAETATGVS FSDIHESSSG YVDKKSPPEH LGLLPKYASE HNPPDNSFCH  120
QETVSGMTHE YGSGYVHETS EKKHQPGSDI VQNNLEEACT LVCGLPAEHL RPCSKDFSKN  180
ARTESLRVLP EDSSKCTQID QLSCLQLGSV EPTAAFGSIN TCKELGEPTE QQQQLGSESL  240
SNGIGKSPTA TSSNAFYQAL ELYPEVMNQS NCGERFQSPS EGASIVSQTG KSYLVDPLGL  300
PPGFESGNSC VQQPRLHSED MARSSGVEQH EATPKNLLEN SVQGRDGESS KTRKKYTPRP  360
LTSSDRVLRS KSQEKSKASE LSNNITDIGS SEQQKGRNRN KMIEKREVSD EYSRIRSHLR  420
YLVNRINYER SLIAAYSTEG WKGLSLEKLK PEKELQRATS EILRRKLKIR DLFQRIDSLC  480
AEGRLPESLF DSKGEIDSED IFCAKCGSKD LSANNDIILC DGVCDRGFHQ YCLQPPLLKE  540
DIPPGDEGWL CPGCYCKLFC IELVNESQGT SFCLADSWEK VFPEAVVAAG GQNQDPNLEL  600
PSDDSDDSDY NAENSEPDEK DQGDESSSDE SDFTCSSEEL EVPRNVDPCL GLLSDDSEDD  660
NYDPDGPDHD NVAEPESSTS DFTSDSEDLG GMLKDNSSSP KDEGPVSNIG STDSKGQKPK  720
LGGNESRSDK LSSIMDSASG QDGTAVSKKR SSEKLDYKKL YDETYVNFPS SSSDDEDWSD  780
TIAPRKRKRH AAGASSAPEN GNASSSRSVS ISEGSKLNPE HKLRRNMRQN SKFKDTNLSP  840
AESKGGTSVS GSSGKKAGSS THRRLGETEK QRLCESFREN QYPDRATKER LGKDLDMTFR  900
QVSKWFENAR WSFNHPTSNQ ETTAKRVAEN AITSVVPKKN *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480183.1	0.0	PREDICTED: homeobox protein HAT3.1-like isoform X1
TrEMBL	A0A0D2RS35	0.0	A0A0D2RS35_GOSRA; Uncharacterized protein
STRING	Gorai.005G234300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7270	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-91	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Gorai.005G234300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]