PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G234300.2
Common NameB456_005G234300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 907aa    MW: 99960.3 Da    PI: 4.8318
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G234300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.41.9e-11833876952
                         HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         +++ ++L e F++n+yp+++++e+L k l++t rqV+ WF N R
  Gorai.005G234300.2 833 ETEKQRLCESFRENQYPDRATKERLGKDLDMTFRQVSKWFENAR 876
                         567899************************************99 PP
2PHD39.31.5e-13490544150
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                         +C+ Cg+    ++++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C +
  Gorai.005G234300.2 490 FCAKCGSkdLSANNDIILCDGvCDRGFHQYCLQPPLLKEDIPPGdeGWLCPGCYC 544
                         699***977677********77********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.52E-15480548IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-13487543IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.941488545IPR019787Zinc finger, PHD-finger
SMARTSM002499.1E-10490543IPR001965Zinc finger, PHD-type
CDDcd155042.35E-26490542No hitNo description
PfamPF006283.6E-11490544IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590491542IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.6E-12810876IPR009057Homeodomain-like
SuperFamilySSF466891.15E-10821879IPR009057Homeodomain-like
PROSITE profilePS5007111.758822882IPR001356Homeobox domain
SMARTSM003893.4E-7825886IPR001356Homeobox domain
CDDcd000862.39E-9829876No hitNo description
PfamPF000465.7E-9833876IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MINVEHMGVS PPETKSEKGN HFAPEETTSE QAHELGSEYL HTELSKNKHP CGYAITRNES  60
AETATGVSFS DIHESSSGYV DKKSPPEHLG LLPKYASEHN PPDNSFCHQE TVSGMTHEYG  120
SGYVHETSEK KHQPGSDIVQ NNLEEACTLV CGLPAEHLRP CSKDFSKNAR TESLRVLPED  180
SSKCTQIDQL SCLQLGSVEP TAAFGSINTC KELGEPTEQQ QQLGSESLSN GIGKSPTATS  240
SNAFYQALEL YPEVMNQSNC GERFQSPSEG ASIVSQTGKS YLVDPLGLPP GFESGNSCVQ  300
QPRLHSEDMA RSSGVEQHEA TPKNLLENSV QGRDGESSKT RKKYTPRPLT SSDRVLRSKS  360
QEKSKASELS NNITDIGSSE QQKGRNRNKM IEKREVSDEY SRIRSHLRYL VNRINYERSL  420
IAAYSTEGWK GLSLEKLKPE KELQRATSEI LRRKLKIRDL FQRIDSLCAE GRLPESLFDS  480
KGEIDSEDIF CAKCGSKDLS ANNDIILCDG VCDRGFHQYC LQPPLLKEDI PPGDEGWLCP  540
GCYCKLFCIE LVNESQGTSF CLADSWEKVF PEAVVAAGGQ NQDPNLELPS DDSDDSDYNA  600
ENSEPDEKDQ GDESSSDESD FTCSSEELEV PRNVDPCLGL LSDDSEDDNY DPDGPDHDNV  660
AEPESSTSDF TSDSEDLGDS KGQKPKLGGN ESRSDKLSSI MDSASGQDGT AVSKKRSSEK  720
LDYKKLYDET YVNFPSSSSD DEDWSDTIAP RKRKRHAAGA SSAPENGNAS SSRSVSISEG  780
SKLNPEHKLR RNMRQNSKFK DTNLSPAESK GGTSVSGSSG KKAGSSTHRR LGETEKQRLC  840
ESFRENQYPD RATKERLGKD LDMTFRQVSK WFENARWSFN HPTSNQETTA KRVAENAITS  900
VVPKKN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480183.10.0PREDICTED: homeobox protein HAT3.1-like isoform X1
SwissprotQ049961e-133HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A0D2RS310.0A0A0D2RS31_GOSRA; Uncharacterized protein
STRINGGorai.005G234300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]