PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G241200.1

Common Name

B456_005G241200, LOC105796037

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 129aa MW: 14784.2 Da PI: 10.1063

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G241200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.2	1.1e-16	18	109	3	92
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 k+lt dv+ + +++p ++eh +g+ +s + +++d+ +++W+++l rk++g+ vltkGW +Fvk gL++gD v+F l+g+ Gorai.005G241200.1 18 KILTATDVGVR--FSFPTATMREHfkllEGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLRVGDKVIFVLHGN 104 66777777765..7*********977555..7889***********6688888899***********************9998 PP SEE.. CS B3 88 sefel 92 ++ +l Gorai.005G241200.1 105 HNDHL 109 77633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-21	13	115	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.56E-17	15	115	No hit	No description
SuperFamily	SSF101936	3.92E-19	16	116	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.2E-11	16	115	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-13	18	108	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.165	53	115	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MHMQSSESEP VMKELCSKIL TATDVGVRFS FPTATMREHF KLLEGSQSLD FQVMDKYSKV 60 WTFRLYTRKN DGHPKPVLTK GWLDFVKRMG LRVGDKVIFV LHGNHNDHLG ILVKRNLKLL 120 GSEHWGDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481134.1	3e-91	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A0D2PY98	6e-90	A0A0D2PY98_GOSRA; Uncharacterized protein
STRING	Gorai.005G241200.1	1e-90	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17815	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	7e-09	VP1/ABI3-like 3

Link Out ? help Back to Top
Phytozome	Gorai.005G241200.1
Entrez Gene	105796037

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]