PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G241200.2

Common Name

B456_005G241200, LOC105796037

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 94aa MW: 10942.8 Da PI: 10.5294

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G241200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.9	5.1e-15	9	74	27	92
---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 27 ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +g+ +s + +++d+ +++W+++l rk++g+ vltkGW +Fvk gL++gD v+F l+g+++ +l Gorai.005G241200.2 9 EGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLRVGDKVIFVLHGNHNDHL 74 444..677899***********6688888899***********************999877633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.194	1	80	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.8E-16	2	80	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.7E-15	3	81	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.68E-12	6	68	No hit	No description
Pfam	PF02362	1.5E-11	9	73	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MREHFKLLEG SQSLDFQVMD KYSKVWTFRL YTRKNDGHPK PVLTKGWLDF VKRMGLRVGD 60 KVIFVLHGNH NDHLGILVKR NLKLLGSEHW GDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481134.1	5e-63	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A0D2PY98	1e-61	A0A0D2PY98_GOSRA; Uncharacterized protein
STRING	Gorai.005G241200.1	2e-62	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.005G241200.2
Entrez Gene	105796037

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]