PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G241300.1

Common Name

B456_005G241300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 120aa MW: 13839.2 Da PI: 10.3927

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G241300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.9	6.9e-17	7	98	3	92
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 k+lt dv+ + +++p ++eh +g+ +s + +++d+ +++W+++l rk++g+ vltkGW +Fvk gLk+gD v+F l+g+++ Gorai.005G241300.1 7 KILTATDVGVR--FSFPTATMREHfkllEGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLKVGDKVIFVLHGNHN 95 66777777765..7*********977555..7889***********6688888899***********************999877 PP E.. CS B3 90 fel 92 +l Gorai.005G241300.1 96 DHL 98 633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-21	3	104	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.33E-16	4	92	No hit	No description
SuperFamily	SSF101936	1.7E-19	5	105	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	4.6E-11	5	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.3E-14	7	98	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.207	42	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MKELCSKILT ATDVGVRFSF PTATMREHFK LLEGSQSLDF QVMDKYSKVW TFRLYTRKND 60 GHPKPVLTKG WLDFVKRMGL KVGDKVIFVL HGNHNDHLGI LVKRNIKLLG SEHWADFFM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481135.1	6e-82	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A0D2NHL9	1e-82	A0A0D2NHL9_GOSRA; Uncharacterized protein
STRING	Gorai.005G241300.1	2e-83	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17815	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.3	1e-07	ARF family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G241300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]