PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G244000.1
Common NameB456_005G244000, LOC105796233
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 87aa    MW: 9517.59 Da    PI: 9.9776
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G244000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-081357345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        +WT+   + + +a + + ++   +W  +a+ +g g+t++++k ++ 
  Gorai.005G244000.1 13 SWTAKQNKDFEKALAVYDKDtpdRWYNVAKAVG-GKTAEEVKRHYE 57
                        7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.493964IPR017884SANT domain
SMARTSM007175.3E-71062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-51266IPR009057Homeodomain-like
SuperFamilySSF466891.47E-121268IPR009057Homeodomain-like
PfamPF002493.8E-61357IPR001005SANT/Myb domain
CDDcd001671.80E-51460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASSSMSSQG SSSWTAKQNK DFEKALAVYD KDTPDRWYNV AKAVGGKTAE EVKRHYELLV  60
KDVKQIESGK VPFPNYRTTG GSNTRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-37782379RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481260.11e-58PREDICTED: protein RADIALIS-like 3 isoform X1
RefseqXP_012481261.11e-58PREDICTED: protein RADIALIS-like 3 isoform X2
SwissprotF4JVB82e-37RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0D2RSV35e-57A0A0D2RSV3_GOSRA; Uncharacterized protein
STRINGGorai.005G244000.18e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-38RAD-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]