PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G252200.1
Common NameB456_005G252200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 346aa    MW: 38169.6 Da    PI: 6.5284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G252200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-0960107354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  Gorai.005G252200.1  60 LQKADREKSRRDRLNEHFLELGNALDPD----RPKNDKATILTDTIQLLKDL 107
                         56778********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.1657107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1257124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.80E-958111No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1158127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-760107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-763113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDQLRKDVAF LPSIPSSNPS IIEFRQPPVD PLVPSTARTQ SKSGQRDGEE PKDCVTARKL  60
QKADREKSRR DRLNEHFLEL GNALDPDRPK NDKATILTDT IQLLKDLTSQ VTKLKGEHAM  120
LTEESREQLT VEKNDLKDEK ASLKSEIDDL NIQYQQRVRT MFPWASVDYP VVMAPPSYPF  180
PVPMAMPPPG AIPMHPSMQP FPFFGNQNPG VIHNPCSTFV PYMTPNTMVE QQPTQHVTPP  240
AQPSGRSHAS GKEDSKNKSS GESKIEKTVD SNDVATDLEL KTPGSTADQD FSSGQRKLKK  300
SLRKENSNTE GSFSSRCSSS YSAQDSSSNS VVGGKKADDL DGRND*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691400.10.0PREDICTED: transcription factor bHLH121-like isoform X1
SwissprotQ9LT237e-90BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0D2SN750.0A0A0D2SN75_GOSRA; Uncharacterized protein
STRINGGorai.005G252200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-82bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]