PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G264500.1
Common NameB456_005G264500, LOC105795503
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 125aa    MW: 14615.1 Da    PI: 10.4371
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G264500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.8e-179102496
                         E-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +l++ d    +rl++p k + ++    +g+    ++ + +desg  W++++ y++k++r    vltkGW+eFv  ++L  gD v F+++++
  Gorai.005G264500.1   9 QLKTTDIE--KRLTIPSKSL-KYfpplDGN--HVVQFKARDESGHHWKFQI-YTRKGKRylkPVLTKGWREFVCTKELTIGDKVEFYMEEK 93 
                         55444444..569*******.566*87555..45679999***********.766666658889***********************9866 PP

                         SEE..EEEE CS
                  B3  88 sefelvvkv 96 
                         +++e + +v
  Gorai.005G264500.1  94 EQGEAMYSV 102
                         665554433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.0524108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-194100IPR015300DNA-binding pseudobarrel domain
CDDcd100174.35E-155106No hitNo description
SMARTSM010192.8E-46108IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-13794IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-1315106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MTKAIVSKQL KTTDIEKRLT IPSKSLKYFP PLDGNHVVQF KARDESGHHW KFQIYTRKGK  60
RYLKPVLTKG WREFVCTKEL TIGDKVEFYM EEKEQGEAMY SVRVFRAVRI FGRIVAYVLD  120
HKSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480603.12e-88PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A0D2RLS95e-87A0A0D2RLS9_GOSRA; Uncharacterized protein
STRINGGorai.005G264500.18e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16920512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.12e-09auxin response factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]