PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G009800.2

Common Name

B456_006G009800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 249aa MW: 28000.7 Da PI: 10.2346

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G009800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.8	1e-30	52	132	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec..e 74 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++ s++ Gorai.006G009800.2 52 FGGKDRHSKVYTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPPpanfpiSDAfwR 132 689*************************************************************66666333322111221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	31.004	54	112	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.5E-28	54	139	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MISSSKNTDF PTRQDEDDDK RNETNKGPSS SSSSSQWLRL KDPRIVRVSR AFGGKDRHSK 60 VYTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPMPPP 120 PANFPISDAF WRTKSKEVTR DVIDDKDDKH RRNEVHAPQV DNFNVVAAPL PSALSLCPLP 180 PPQPGGGAPP LFPPHVVDPR QQVNHFQMLS SGAQQNLLLN SLNFPPITQS FRPFQLMPPR 240 FPHNQPDK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-18	59	113	1	55	Putative transcription factor PCF6
5zkt_B	1e-18	59	113	1	55	Putative transcription factor PCF6
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.150	1e-162	flower\|seedling\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527708	1e-142	HQ527708.1 Gossypium herbaceum clone NBRI_A_8683 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016668162.1	1e-142	PREDICTED: transcription factor TCP13-like
Refseq	XP_016668163.1	1e-142	PREDICTED: transcription factor TCP13-like
Refseq	XP_016668164.1	1e-142	PREDICTED: transcription factor TCP13-like
Refseq	XP_017608896.1	1e-142	PREDICTED: transcription factor TCP13-like
Refseq	XP_017608897.1	1e-142	PREDICTED: transcription factor TCP13-like
Refseq	XP_017608898.1	1e-142	PREDICTED: transcription factor TCP13-like
TrEMBL	A0A0D2RVE4	1e-178	A0A0D2RVE4_GOSRA; Uncharacterized protein
STRING	Gorai.006G009800.1	1e-142	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	6e-41	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Gorai.006G009800.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]