PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G013300.1
Common NameB456_006G013300, LOC105798151
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 509aa    MW: 55378.7 Da    PI: 7.1988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G013300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30228285260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK++kg e+prsYY+Ct+++Cpvkk versa ++ ++ei+Y+++Hnhek
  Gorai.006G013300.1 228 EDGYNWRKYGQKQIKGCEYPRSYYKCTHPSCPVKKIVERSA-EGLITEIIYKSTHNHEK 285
                         8****************************************.***************85 PP
2WRKY107.37.8e-34393451159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Gorai.006G013300.1 393 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASSDPKAVITTYEGKHNHD 451
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.022222286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-27223286IPR003657WRKY domain
SuperFamilySSF1182903.14E-24226286IPR003657WRKY domain
SMARTSM007743.1E-34227285IPR003657WRKY domain
PfamPF031068.6E-24228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-37379453IPR003657WRKY domain
SuperFamilySSF1182909.68E-30385453IPR003657WRKY domain
PROSITE profilePS5081139.226388453IPR003657WRKY domain
SMARTSM007744.8E-40393452IPR003657WRKY domain
PfamPF031061.6E-26394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAAEQGKRSK LSAPTYPTIT LPPRPPIDGL FQSGSGLSPG PMTLVSAFFS DPDSTNRSFS  60
QLLAGAMASP GAKLPYNPMD DSFMEVGFEN GGEKNSGFKQ NRPLNLGVGN SPWFTVPPGL  120
SPSGLLNSPG LFCLSPQSPF GISHQQALAQ VTAQAALVQS HVHAQPEYQT LSAATSSEPS  180
IPPSSANPEE TLQRMLSSDP QSSAMECLEA SQFDKKSQPC VAVDKPAEDG YNWRKYGQKQ  240
IKGCEYPRSY YKCTHPSCPV KKIVERSAEG LITEIIYKST HNHEKPPPNK QPKGGSDGNA  300
NLQGNLELGS LVVAGNSNNL SEGKNHESTQ PVELPGFSDC EEGCDEESRE ERDDDEPNRK  360
RRNSTGEAAV VLSHKTVTDA KIIVQTRSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT  420
SAGCNVRKHV ERASSDPKAV ITTYEGKHNH DVPAARNGSH NTVNNSLPQP KQQHDAVAEK  480
HSLLQEIDFR KNVQGPAVLR LKEEQIRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-39228454878Probable WRKY transcription factor 4
2lex_A1e-39228454878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.15300.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488268680.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9668870.0FJ966887.1 Gossypium hirsutum WRKY3 transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483543.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-138WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0D2RVP30.0A0A0D2RVP3_GOSRA; Uncharacterized protein
STRINGGorai.006G013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-112WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]