PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G013300.2
Common NameB456_006G013300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 376aa    MW: 40434 Da    PI: 5.2616
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G013300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30228285260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK++kg e+prsYY+Ct+++Cpvkk versa ++ ++ei+Y+++Hnhek
  Gorai.006G013300.2 228 EDGYNWRKYGQKQIKGCEYPRSYYKCTHPSCPVKKIVERSA-EGLITEIIYKSTHNHEK 285
                         8****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.022222286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-27223286IPR003657WRKY domain
SuperFamilySSF1182901.96E-24226286IPR003657WRKY domain
SMARTSM007743.1E-34227285IPR003657WRKY domain
PfamPF031065.6E-24228284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAAEQGKRSK LSAPTYPTIT LPPRPPIDGL FQSGSGLSPG PMTLVSAFFS DPDSTNRSFS  60
QLLAGAMASP GAKLPYNPMD DSFMEVGFEN GGEKNSGFKQ NRPLNLGVGN SPWFTVPPGL  120
SPSGLLNSPG LFCLSPQSPF GISHQQALAQ VTAQAALVQS HVHAQPEYQT LSAATSSEPS  180
IPPSSANPEE TLQRMLSSDP QSSAMECLEA SQFDKKSQPC VAVDKPAEDG YNWRKYGQKQ  240
IKGCEYPRSY YKCTHPSCPV KKIVERSAEG LITEIIYKST HNHEKPPPNK QPKGGSDGNA  300
NLQGNLELGS LVVAGNSNNL SEGKNHESTQ PVELPGFSDC EEGCDEESRE ERDDDEPNRK  360
RRQVLNQFVI GLGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-172292871675WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.15300.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488268680.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9668870.0FJ966887.1 Gossypium hirsutum WRKY3 transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483543.10.0PREDICTED: probable WRKY transcription factor 3
TrEMBLA0A0D2NKC30.0A0A0D2NKC3_GOSRA; Uncharacterized protein
STRINGGorai.006G013300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-58WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]