PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G013600.1
Common NameB456_006G013600, LOC105797808
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 369aa    MW: 40670.2 Da    PI: 4.3981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G013600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-194392255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Gorai.006G013600.1 43 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 92
                        789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.58E-324299No hitNo description
SuperFamilySSF541713.33E-1943100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-274399IPR001471AP2/ERF domain
SMARTSM003801.6E-3543106IPR001471AP2/ERF domain
PfamPF008478.7E-144392IPR001471AP2/ERF domain
PROSITE profilePS5103219.55943100IPR001471AP2/ERF domain
PRINTSPR003675.0E-84455IPR001471AP2/ERF domain
PRINTSPR003675.0E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRKRKVVTD MATEDETMGW DEMVKQAAAA TAGLSGIRRA RKRFVGVRQR PSGRWVAEIK  60
DTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PCSSSSMNST PALSSKISNR  120
LLQRIQAKNN SCFPLPTPSP PPVSVSVNAC VSQQPLLQEV EDDNNHGFLD VLEDFSMSND  180
ELFNATSVES CLTDNEDCSK RELDWSSPSN DDDLGDEGTL DFQFVDEIGF GPSYSCSPFQ  240
LAEELEAPTM MAEILADEHS MISYERKFSA SLYAFNGIPE LLKRKLGSEA AMAERRSEQL  300
SALRNACKNN NKREKQDDLG TKQEESPQSS FDSSSSMDMV EPSSSGNHDG ESLWSSLDLP  360
PIIALLTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-143399471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483176.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A0D2RVI00.0A0A0D2RVI0_GOSRA; Uncharacterized protein
STRINGGorai.006G013600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1827989
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]