PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G015200.1
Common NameB456_006G015200, LOC105798168
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 358aa    MW: 40068.9 Da    PI: 8.9147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G015200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-1889135148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg W + Ed +l+++v+++G+ +W++Ia++++ gRt+k+c++rw+++l
  Gorai.006G015200.1  89 RGHWKPAEDSKLKELVTLYGPQNWNLIAEKFQ-GRTGKSCRLRWFNHL 135
                         899*****************************.*************97 PP
2Myb_DNA-binding55.61.2e-17141184146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++++T+eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Gorai.006G015200.1 141 KKAFTEEEEERLMAAHRAYGNK-WAMIARLFP-GRTDNAVKNHWHV 184
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.55384135IPR017930Myb domain
SMARTSM007176.4E-1588137IPR001005SANT/Myb domain
PfamPF002491.8E-1689135IPR001005SANT/Myb domain
SuperFamilySSF466896.6E-2989182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-2790142IPR009057Homeodomain-like
CDDcd001672.83E-1392135No hitNo description
PROSITE profilePS5129426.515136190IPR017930Myb domain
SMARTSM007171.4E-14140188IPR001005SANT/Myb domain
PfamPF002493.7E-14141183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21143189IPR009057Homeodomain-like
CDDcd001676.36E-11143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MKMTLQQFHN SSCFHHQENN GFSKYYTIYQ PPSNSSMEVL KPIEGFSYCL EDHFSKGSEM  60
GAVSMSVVRG RSEFFLNGKD VGVSKICSRG HWKPAEDSKL KELVTLYGPQ NWNLIAEKFQ  120
GRTGKSCRLR WFNHLDPRIN KKAFTEEEEE RLMAAHRAYG NKWAMIARLF PGRTDNAVKN  180
HWHVIMSRKY REQASAYRRR KLSQAAIGDF TDSTQNPYLA SFVGPNGSYN KGSTSRKEDE  240
INGGDLFLGS KSKSFKACEN STPLDFFSDY RSQEGLISRN SRQWKMVQEE TMLMQESCNH  300
YQPSGFSDSM ASASQVTVTE PSSSSVSHLE TTITAPSAAA AAAAASPPFI DFLGVGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-35891897107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527250.0KM052725.1 Gossypium hirsutum LOF-like transcription factor LOF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483585.10.0PREDICTED: myb-related protein MYBAS1-like
TrEMBLA0A0D2NK170.0A0A0D2NK17_GOSRA; Uncharacterized protein
STRINGGorai.006G015200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-74myb domain protein 105
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]