PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G016100.1

Common Name

B456_006G016100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 98aa MW: 11071.5 Da PI: 7.9293

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G016100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.3	2.3e-16	16	55	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gC+Ck+skClkkYCeC+ a++ Cs+ C+CedC N+ Gorai.006G016100.1 16 RHKRGCKCKRSKCLKKYCECYRAKVGCSDGCHCEDCDNSF 55 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	17.685	1	56	IPR005172	CRC domain
SMART	SM01114	5.7E-15	16	57	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.4E-12	18	54	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MFETGDENLM NTPSARHKRG CKCKRSKCLK KYCECYRAKV GCSDGCHCED CDNSFGKKSE 60 SMFQRVEKQQ NQSHEVLNTT QVMSDSTLVG ITNPFFE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483597.1	4e-59	PREDICTED: uncharacterized protein LOC105798177 isoform X1
Refseq	XP_012483599.1	1e-59	PREDICTED: uncharacterized protein LOC105798177 isoform X2
Refseq	XP_012483600.1	5e-60	PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X3
Swissprot	Q8L548	2e-19	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A0D2Q1X0	4e-66	A0A0D2Q1X0_GOSRA; Uncharacterized protein
STRING	Gorai.006G016100.1	7e-67	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15696	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	7e-22	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.006G016100.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]