PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G021500.1

Common Name

B456_006G021500, LOC105797821

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 102aa MW: 11442.5 Da PI: 10.554

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G021500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.2e-06	26	65	13	54
HHHHHHHH.HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsaf.eeLrellPkaskapskKlsKaeiLekAveYIksL 54 R++ N+ f +Lrell ++ ++kK + a L +++++Ik+L Gorai.006G021500.1 26 RSNENEDFsLRLRELLSTN---KKKKRNAAKLLDETCNHIKKL 65 66667777679******...*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-5	26	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-6	35	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MSSKRSSGRS NERSSGRSNE RSSGSRSNEN EDFSLRLREL LSTNKKKKRN AAKLLDETCN 60 HIKKLNGEVD DLSNRISELL NSSETESSNI NANILRQFLQ Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483183.1	8e-63	PREDICTED: transcription factor PRE3-like
TrEMBL	A0A0D2RP29	2e-61	A0A0D2RP29_GOSRA; Uncharacterized protein
STRING	Gorai.006G021500.1	3e-62	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25061	3	4

Link Out ? help Back to Top
Phytozome	Gorai.006G021500.1
Entrez Gene	105797821

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]