PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G025700.1
Common NameB456_006G025700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 501aa    MW: 54534.3 Da    PI: 6.8967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G025700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.7e-29221279259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+rs ed +++++tYeg+Hnh+
  Gorai.006G025700.1 221 YDGCQWRKYGQKISKGNPCPRAYYRCTVApDCPVRKQVQRSFEDMSILVTTYEGSHNHP 279
                         59**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-30205281IPR003657WRKY domain
SuperFamilySSF1182902.22E-26212281IPR003657WRKY domain
PROSITE profilePS5081128.082215281IPR003657WRKY domain
SMARTSM007742.8E-35220280IPR003657WRKY domain
PfamPF031062.2E-25222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
TGVIKVFIIF TKTITVEVLL MNMADDHAVK QEENITQEGC SPEPSKTDIG RKVHKTVDLK  60
SSSSSSSHDE LETAKEENER LKMMLEQIQK NYKSLQSRFL EIIKQGSAIE EGSEEPELVS  120
LSLGRSSPTG SKKDDKKTTI CSKTEEDDHN KSGLTLGLDS KFQLSTEIVS NPSHENSSEE  180
ASKVQKRPSS GVDHEEGVEQ KSQVKRARVS VRTRCDAPTM YDGCQWRKYG QKISKGNPCP  240
RAYYRCTVAP DCPVRKQVQR SFEDMSILVT TYEGSHNHPI PVSATTMAST TAAAASMLLS  300
GSSTSQPALS TEINGLNFSS SLHDNSRLPS YPTITLDLTG SPSSSSSFNY FNRFPTNCPA  360
TPRFPSTNLN FSSPLVSNES FTQENYFYQQ SLTDTLTKAI TSDPSFRSLI SAAISSLVGH  420
SSAKHGDGTD QKGDSFSQNL MQAAINSQSL NDSSLRGSSY FKGFESSSSR IGSSNQSSSL  480
SFSSFNAAST LAFDNKQGKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-20207281174WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384710.0KM438471.1 Gossypium aridum WRKY75 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483720.10.0PREDICTED: probable WRKY transcription factor 72 isoform X1
SwissprotA0A3Q7GFB57e-88WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A0D2Q2530.0A0A0D2Q253_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.006G025700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2488934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-77WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]