PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G037500.1
Common NameB456_006G037500, LOC105798402
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 244aa    MW: 27757.9 Da    PI: 5.0631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G037500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.6e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
  Gorai.006G037500.1 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding55.71.1e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++
  Gorai.006G037500.1  67 RGAFTESEEDQIIQLHGRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.486961IPR017930Myb domain
SuperFamilySSF466897.11E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-61363IPR001005SANT/Myb domain
PfamPF002496.3E-121461IPR001005SANT/Myb domain
CDDcd001679.33E-51661No hitNo description
PROSITE profilePS5129427.13862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2665117IPR009057Homeodomain-like
SMARTSM007179.4E-1766114IPR001005SANT/Myb domain
PfamPF002492.6E-1667110IPR001005SANT/Myb domain
CDDcd001671.57E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TESEEDQIIQ LHGRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPVTHKPIE KVEKNDGDSS NKSNGDDQQQ GIELDDDEKV EGIELSLDET NDLFNSYQML  180
CESFDLDSWL NQDAANNTCS SSYSMEESSN KSSTGETNST IGEDSLKQWV DSVDSFLSWD  240
SFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-28121162105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483906.11e-180PREDICTED: myb-related protein 315-like
SwissprotP813941e-82MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A0D2RVD11e-179A0A0D2RVD1_GOSRA; Uncharacterized protein
STRINGGorai.006G037500.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-84myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]