PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G054800.1
Common NameB456_006G054800, LOC105798613
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 230aa    MW: 26001.4 Da    PI: 9.3435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G054800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.51.1e-19150184135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Gorai.006G054800.1 150 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 184
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-15144194IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.532144180IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15146207No hitNo description
Gene3DG3DSA:3.30.50.106.8E-15148182IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.03E-14149197No hitNo description
PfamPF003203.1E-17150184IPR000679Zinc finger, GATA-type
PROSITE patternPS003440150175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEAFDMAACF EDNLLDFASD VGEEDEDKEH NKKSSTSSSS LNPNNSCFSE FAEEELEWLS  60
NKDAFPAVET SFVDVLGTAT KHQSSLTLTN GNVVMYCFGN VKIPVKARSK RLRKCRDLRD  120
HEKNWWVHEN VKTSNATAKG NRWRTMGRKC QHCGAEKTPQ WRAGPLGPKT LCNACGVRYK  180
SGRLVPEYRP ASSPTFSSKL HSNSHRKILE MRRHKQLGFP SMKPMDKRL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484193.11e-173PREDICTED: GATA transcription factor 1-like isoform X2
RefseqXP_016670345.11e-173PREDICTED: GATA transcription factor 1-like isoform X2
SwissprotQ8LAU97e-45GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A0D2RQQ51e-172A0A0D2RQQ5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HWG11e-172A0A1U8HWG1_GOSHI; GATA transcription factor 1-like isoform X2
TrEMBLA0A2P5SBW51e-171A0A2P5SBW5_GOSBA; Uncharacterized protein
STRINGGorai.006G054800.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-47GATA transcription factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]