PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G061600.1
Common NameB456_006G061600, LOC105798681
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 415aa    MW: 46530.5 Da    PI: 4.8068
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G061600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.2e-091659340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + +k+++++C  ++ +lC+ C ++ H+       Ht+v
  Gorai.006G061600.1 16 ARACDGCLRKRARWYCSADDAFLCQGCDTSVHSAnqlasrHTRV 59
                        578*****************************668899999987 PP
2CCT68.51.8e-23358401144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+a
  Gorai.006G061600.1 358 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRIKGRFVKRA 401
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5091461IPR000315B-box-type zinc finger
PfamPF006431.9E-71659IPR000315B-box-type zinc finger
CDDcd000211.80E-91761No hitNo description
PROSITE profilePS5101716.152358400IPR010402CCT domain
PfamPF062036.7E-18358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MISDKRAANA MGGKTARACD GCLRKRARWY CSADDAFLCQ GCDTSVHSAN QLASRHTRVR  60
LETASSRFNA SVINNSATDQ DAPPAWHQGF TRKARTPRQN RSILGQQKSE GKVWDLNPLV  120
PEVGCEDGSA DETEDQLLCR VPVFDPFSAE LRDMVNENGN LVVDGFEDEG TCQLDDGLHG  180
FLPSDLDLAQ FAADVESLLG DGLDENNTCN HTKGTELMDC KQEDESNAFQ ERKIKDEEEE  240
EEGIITACCF DSDFDVTRSS LNWSFDYESP TIGDQEEEEK VVPVAETMDG ENKAEKKRNM  300
LLRLDYESVI TAWATQGSPW TSGTRPEFNP DDFMGSNPKE GIGGICSQGK RNITDGEREA  360
RVSRYREKRR TRLFSKKIRY QVRKLNAEKR PRIKGRFVKR ASFVGGDCFS YYIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368384RRTRLFSKKIRYQVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834523e-62JX583452.1 Gossypium hirsutum clone NBRI_GE16495 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484296.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-93COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0D2NMI00.0A0A0D2NMI0_GOSRA; Uncharacterized protein
STRINGGorai.006G061600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-96B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]