PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G073500.1
Common NameB456_006G073500, LOC105797882
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 241aa    MW: 28385.2 Da    PI: 9.0968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G073500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-192269148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll ++v+++G g+W+++ar  g++R +k+c++rw +yl
  Gorai.006G073500.1 22 KGPWTAEEDRLLTEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                        79********************************************97 PP
2Myb_DNA-binding521.6e-1675119147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Gorai.006G073500.1  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4891769IPR017930Myb domain
SuperFamilySSF466894.49E-3020116IPR009057Homeodomain-like
SMARTSM007172.1E-162171IPR001005SANT/Myb domain
PfamPF002494.6E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-242376IPR009057Homeodomain-like
CDDcd001677.45E-112469No hitNo description
PROSITE profilePS5129424.05870124IPR017930Myb domain
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PfamPF002499.4E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2477123IPR009057Homeodomain-like
CDDcd001672.72E-979120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSWAMMGEQF GWGVIEEEAW RKGPWTAEED RLLTEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKLSPDN SDQAKARTLK RQHFQQQLLQ QKQQQQYLQL NESDMKRMMS LLEETEPKAP  180
FMPQLRQEMG AATSCPNMVE EQSLFYPMGN GNETSNEDVV WDGLWNLDDY QWKLWCSKPS  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-26912414128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483223.11e-180PREDICTED: transcription factor MYB21-like
TrEMBLA0A0D2RRS71e-179A0A0D2RRS7_GOSRA; Uncharacterized protein
STRINGGorai.006G073500.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.18e-83myb domain protein 79
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]