PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G078000.1

Common Name

B456_006G078000, LOC105798875

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 200aa MW: 21721.2 Da PI: 9.0649

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G078000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Gorai.006G078000.1 49 FECQFCHRGFANSQALGGHQNAH 71 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.73E-6	47	76	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-4	47	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.427	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MNSADNYGDD EPGCGKPSSS TMKLFGFQVG ADEECPPSVR RNVSEYRRFE CQFCHRGFAN 60 SQALGGHQNA HKRERRAKQG SFFTLHHQQQ QQLKQRFLTT GPVISPHSAR TRRLAYGRGS 120 TSMAPRGGLS AAAPSLPMLT PRGPCPFHVG GGGQGQGQGP FQVQNHEVGV NLTANEVIEE 180 DNIDLHLRLA PFIDRANGP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484560.1	1e-146	PREDICTED: zinc finger protein KNUCKLES-like
TrEMBL	A0A0D2Q5A5	1e-145	A0A0D2Q5A5_GOSRA; Uncharacterized protein
STRING	Gorai.006G078000.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20638	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	5e-12	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G078000.1
Entrez Gene	105798875

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]