PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G079800.1

Common Name

B456_006G079800, LOC105797889

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 157aa MW: 17892.8 Da PI: 8.705

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G079800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.3e-11	24	60	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ +r+++NRe+ArrsR +K++ +e L ++v+ L+ + Gorai.006G079800.1 24 KKRKRMISNRESARRSRMKKQKLLEDLVTEVALLKVQ 60 899*******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-12	20	84	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-7	22	99	No hit	No description
PROSITE profile	PS50217	9.507	22	85	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.43E-10	24	76	No hit	No description
Pfam	PF00170	1.8E-8	24	72	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.19E-16	25	74	No hit	No description
PROSITE pattern	PS00036	0	27	42	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MSNVPGMMSS GSEPDAQGVN VDEKKRKRMI SNRESARRSR MKKQKLLEDL VTEVALLKVQ 60 IHKNTNKYEA LMQKIVVLES ENNALKVQQM ELAQYLKNLQ LMQTQMELLE FNLMNQPGRT 120 LCDIIVDINE PPKVQSWQCH GSNQPAIMAS TEMLNY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483227.1	1e-112	PREDICTED: basic leucine zipper 1-like
TrEMBL	A0A0D2RS20	1e-110	A0A0D2RS20_GOSRA; Uncharacterized protein
STRING	Gorai.006G079800.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3036	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49450.1	2e-22	basic leucine-zipper 1

Link Out ? help Back to Top
Phytozome	Gorai.006G079800.1
Entrez Gene	105797889

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]