PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G080800.1
Common NameB456_006G080800, LOC105798906
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 32983.8 Da    PI: 7.0697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G080800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172370148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l++++  +G+g+W++ a+  g++Rt+k+c++rw++yl
  Gorai.006G080800.1 23 RGPWTIEEDFKLINYISIHGKGRWNSLAHSAGLKRTGKSCRLRWLNYL 70
                        89********************************************97 PP
2Myb_DNA-binding48.91.5e-1576119146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Gorai.006G080800.1  76 RGNITLEEQLLILQLHSRWGNR-WSKIAQFLP-GRTDNEIKNYWRT 119
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0491874IPR017930Myb domain
SuperFamilySSF466899.73E-3120117IPR009057Homeodomain-like
SMARTSM007175.2E-142272IPR001005SANT/Myb domain
PfamPF002493.9E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-222477IPR009057Homeodomain-like
CDDcd001672.74E-112570No hitNo description
SMARTSM007175.9E-1475123IPR001005SANT/Myb domain
PROSITE profilePS5129417.90475125IPR017930Myb domain
PfamPF002492.7E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2278124IPR009057Homeodomain-like
CDDcd001675.68E-796119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDVKARSSSG PNMVSTEEED LKRGPWTIEE DFKLINYISI HGKGRWNSLA HSAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LEEQLLILQL HSRWGNRWSK IAQFLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNSKEFKDT MRYLWMPRLV ERIQAATTTT NTASTSAAMT SNASIEQMML  180
PNLSYYTPDN ASTTASSDSI GTQVSPISDS IDYYNGVSTN YNPNHDYLQA NHESLISPIG  240
SYCNNGDGMD FGLMELNHHW ASDGDGDGSH NLLNAEDFFF LQHQFNFNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-272011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484599.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY32e-87MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0D2NNI90.0A0A0D2NNI9_GOSRA; Uncharacterized protein
STRINGGorai.006G080800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-82myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]