PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G085000.2

Common Name

B456_006G085000, LOC105798953

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 344aa MW: 37709.7 Da PI: 7.2373

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G085000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	235	272	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Gorai.006G085000.2 235 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 272 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.503	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.77E-5	233	276	No hit	No description
SuperFamily	SSF47459	2.75E-11	233	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-8	233	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK 60 HQQAADSHNN GSSVFIDSSL KMMDFDLSST PDCNQSFQQE PVAMDSALLQ GLLFEPDAQA 120 QQHSLNFNNR SINHMPAGAT YGANANGILS PPWPKLAPFV RPSLPKQLPS SLPLPQSQVL 180 LQTFENKLNC PRPTIETNTK QVRNLASVMK KGSGEPPLKR PRIETPLPLP TFKVRKEKLG 240 DRITALQQLV SPFGKTDTAS VLHETIEYIK FLHDQVNVLS TPYVKQAAVS IPQGIDHRLK 300 DTEGSKQDLR SRGLCLVPIS TTFTVANETT ADFWTPAFVG TLR*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK  60
HQQAADSHNN GSSVFIDSSL KMMDFDLSST PDCNQSFQQE PVAMDSALLQ GLLFEPDAQA  120
QQHSLNFNNR SINHMPAGAT YGANANGILS PPWPKLAPFV RPSLPKQLPS SLPLPQSQVL  180
LQTFENKLNC PRPTIETNTK QVRNLASVMK KGSGEPPLKR PRIETPLPLP TFKVRKEKLG  240
DRITALQQLV SPFGKTDTAS VLHETIEYIK FLHDQVNVLS TPYVKQAAVS IPQGIDHRLK  300
DTEGSKQDLR SRGLCLVPIS TTFTVANETT ADFWTPAFVG TLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484676.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBL	A0A0D2Q5Q4	0.0	A0A0D2Q5Q4_GOSRA; Uncharacterized protein
STRING	Gorai.006G085000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	3e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G085000.2
Entrez Gene	105798953

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]