PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G104800.1
Common NameB456_006G104800, LOC105799143
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 257aa    MW: 27729.1 Da    PI: 7.327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G104800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022111133123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C++sF++   L  H+ +H
  Gorai.006G104800.1 111 HECKTCNRSFPSFQALGGHMASH 133
                         78******************999 PP
2zf-C2H213.50.00021169191123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Gorai.006G104800.1 169 HECSICGSEFTSGQALGGHMRRH 191
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-14110135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-9111133No hitNo description
SMARTSM003550.019111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-9164191No hitNo description
Gene3DG3DSA:3.30.160.603.0E-4164191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.8E-11169192IPR007087Zinc finger, C2H2
SMARTSM003550.019169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQAQAVFVGS DHHHHQALIM KGKRTKRQRS PSLFGVAVTS SSSNGGDGVV EEYNSISSPT  60
TSDEIYGSTE EEEEMANCLI MLAQSDGPKR STVEAKFKIA TKTNKGELYV HECKTCNRSF  120
PSFQALGGHM ASHKKPKGAI AEQKRPLVLA VNDAVIALRV SNKKGNKIHE CSICGSEFTS  180
GQALGGHMRR HRTASAAAAS NQDAMNGDDD IKPRNITPLD LNLPAPEDDV RDSMFEFGTP  240
QQAIVFSTPA LVDCHY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484999.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X42e-67ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0D2RTI30.0A0A0D2RTI3_GOSRA; Uncharacterized protein
STRINGGorai.006G104800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-67C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]