PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G107300.2

Common Name

B456_006G107300, LOC105799169

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 518aa MW: 58035.6 Da PI: 4.5769

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G107300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.7e-10	364	407	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el++ a++q+G++ +++I + ++ gR++ q+k+++ + Gorai.006G107300.2 364 RARWSKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 407 569***************88.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	2.9E-25	360	439	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-6	362	408	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.632	362	413	IPR017884	SANT domain
SMART	SM00717	1.3E-8	363	411	IPR001005	SANT/Myb domain
CDD	cd00167	5.49E-7	366	407	No hit	No description
SuperFamily	SSF46689	3.51E-10	366	414	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MFGMTTASGR RTEKFKPKPR LQTSVPASPP TVVEWVMHPA TARFVPSETA FKEGSIPDFP 60 SDHVPNCAPV DLGSFIPPDP STSECPVNEE LANLAVSSNA GVDLSGDVPD MPTEVISTIM 120 ERNASLVSNP SRESKQSSTG GEVNGEGKAR KQLREQVTTP HNVDDLEDGT CNDDGLDAEL 180 PSYYAIDEDK DDNDDDEFNV EHASPKRRTS KRSKKPVNES EKPPRKRRKA NEAQKHKKAN 240 EASDNPEKEQ RKKFSHSTRR KRRFVDESLL TTPEDEIDFA KVALKDLILL ADYKERIAKK 300 EAKALKEPLT DQSTQKRLNE ENARDEESSI ASEQDQGIMD DQVNGSAQSD IYFNYQTLMT 360 KEPRARWSKQ DTELFYGAIR QFGPDFSLIQ QLFPGRSRHQ IKLKFKNEER RSPFKLSEAL 420 ASRASDHSYF AKVIEQLQQV SGADPEAHGD VSNDLTREEE EVTPENNEEA AKPKQDEDVA 480 VGDQEADITQ DHSSLKSNEM DDEDDDDEIL NSYQSAF*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MFGMTTASGR RTEKFKPKPR LQTSVPASPP TVVEWVMHPA TARFVPSETA FKEGSIPDFP  60
SDHVPNCAPV DLGSFIPPDP STSECPVNEE LANLAVSSNA GVDLSGDVPD MPTEVISTIM  120
ERNASLVSNP SRESKQSSTG GEVNGEGKAR KQLREQVTTP HNVDDLEDGT CNDDGLDAEL  180
PSYYAIDEDK DDNDDDEFNV EHASPKRRTS KRSKKPVNES EKPPRKRRKA NEAQKHKKAN  240
EASDNPEKEQ RKKFSHSTRR KRRFVDESLL TTPEDEIDFA KVALKDLILL ADYKERIAKK  300
EAKALKEPLT DQSTQKRLNE ENARDEESSI ASEQDQGIMD DQVNGSAQSD IYFNYQTLMT  360
KEPRARWSKQ DTELFYGAIR QFGPDFSLIQ QLFPGRSRHQ IKLKFKNEER RSPFKLSEAL  420
ASRASDHSYF AKVIEQLQQV SGADPEAHGD VSNDLTREEE EVTPENNEEA AKPKQDEDVA  480
VGDQEADITQ DHSSLKSNEM DDEDDDDEIL NSYQSAF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	227	KRRTSKRSKKPVNESEKPPRKRR
2	206	212	RRTSKRS
3	213	228	KKPVNESEKPPRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485033.1	0.0	PREDICTED: transcription factor TFIIIB component B'' homolog isoform X1
TrEMBL	A0A0D2NQ13	0.0	A0A0D2NQ13_GOSRA; Uncharacterized protein
STRING	Gorai.006G107300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-39	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G107300.2
Entrez Gene	105799169

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]