PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G107300.3

Common Name

B456_006G107300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 482aa MW: 54034.9 Da PI: 4.4692

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G107300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.5e-10	328	371	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el++ a++q+G++ +++I + ++ gR++ q+k+++ + Gorai.006G107300.3 328 RARWSKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 371 569***************88.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	2.6E-25	324	403	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-6	326	372	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.632	326	377	IPR017884	SANT domain
SMART	SM00717	1.3E-8	327	375	IPR001005	SANT/Myb domain
CDD	cd00167	5.29E-7	330	371	No hit	No description
SuperFamily	SSF46689	3.14E-10	330	378	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MHPATARFVP SETAFKEGSI PDFPSDHVPN CAPVDLGSFI PPDPSTSECP VNEELANLAV 60 SSNAGVDLSG DVPDMPTEVI STIMERNASL VSNPSRESKQ SSTGGEVNGE GKARKQLREQ 120 VTTPHNVDDL EDGTCNDDGL DAELPSYYAI DEDKDDNDDD EFNVEHASPK RRTSKRSKKP 180 VNESEKPPRK RRKANEAQKH KKANEASDNP EKEQRKKFSH STRRKRRFVD ESLLTTPEDE 240 IDFAKVALKD LILLADYKER IAKKEAKALK EPLTDQSTQK RLNEENARDE ESSIASEQDQ 300 GIMDDQVNGS AQSDIYFNYQ TLMTKEPRAR WSKQDTELFY GAIRQFGPDF SLIQQLFPGR 360 SRHQIKLKFK NEERRSPFKL SEALASRASD HSYFAKVIEQ LQQVSGADPE AHGDVSNDLT 420 REEEEVTPEN NEEAAKPKQD EDVAVGDQEA DITQDHSSLK SNEMDDEDDD DEILNSYQSA 480 F*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MHPATARFVP SETAFKEGSI PDFPSDHVPN CAPVDLGSFI PPDPSTSECP VNEELANLAV  60
SSNAGVDLSG DVPDMPTEVI STIMERNASL VSNPSRESKQ SSTGGEVNGE GKARKQLREQ  120
VTTPHNVDDL EDGTCNDDGL DAELPSYYAI DEDKDDNDDD EFNVEHASPK RRTSKRSKKP  180
VNESEKPPRK RRKANEAQKH KKANEASDNP EKEQRKKFSH STRRKRRFVD ESLLTTPEDE  240
IDFAKVALKD LILLADYKER IAKKEAKALK EPLTDQSTQK RLNEENARDE ESSIASEQDQ  300
GIMDDQVNGS AQSDIYFNYQ TLMTKEPRAR WSKQDTELFY GAIRQFGPDF SLIQQLFPGR  360
SRHQIKLKFK NEERRSPFKL SEALASRASD HSYFAKVIEQ LQQVSGADPE AHGDVSNDLT  420
REEEEVTPEN NEEAAKPKQD EDVAVGDQEA DITQDHSSLK SNEMDDEDDD DEILNSYQSA  480
F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	191	KRRTSKRSKKPVNESEKPPRKRR
2	170	176	RRTSKRS
3	177	192	KKPVNESEKPPRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485033.1	0.0	PREDICTED: transcription factor TFIIIB component B'' homolog isoform X1
TrEMBL	A0A0D2Q7B5	0.0	A0A0D2Q7B5_GOSRA; Uncharacterized protein
STRING	Gorai.006G107300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-40	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G107300.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]