PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G107500.1
Common NameB456_006G107500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 276aa    MW: 30135.9 Da    PI: 10.3857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G107500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20135184255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g
  Gorai.006G107500.1 135 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDTAARRLRG 184
                         69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-30134193No hitNo description
Gene3DG3DSA:3.30.730.101.2E-29135192IPR001471AP2/ERF domain
SMARTSM003801.6E-32135198IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-21135192IPR016177DNA-binding domain
PfamPF008471.2E-13135184IPR001471AP2/ERF domain
PROSITE profilePS5103222.853135192IPR001471AP2/ERF domain
PRINTSPR003671.1E-10136147IPR001471AP2/ERF domain
PRINTSPR003671.1E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
ILPDAKSERE GERLKVRMIP LITSFLIYFH LIHNPVPLLV IRQKGLSYPP FYTEFSDSGN  60
GIGTYPETQP VLDGIAAVVG QHVLFGTKTN PTTSNSQGDG DRASTEETSS FVSASHRFGS  120
NKRNVNAAAA SMQKSYRGVR KRPWGRWSAE IRDRIGRCRH WLGTFDTAEE AARAYDTAAR  180
RLRGSKAKTN FEIPSTLRLS SPCSTSSSST EAKKKVKSKG NKTQRKCEVV TSVAHLFSSG  240
GNEGKGSEEL ELKLGMGLNN KPAMPSNDVG SVNHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-17134193161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-161361911571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483243.11e-170PREDICTED: ethylene-responsive transcription factor ERF084-like
TrEMBLA0A0D2NQ200.0A0A0D2NQ20_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.006G107500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-22ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]