PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G113100.1
Common NameB456_006G113100, LOC105799232
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 211aa    MW: 24305.8 Da    PI: 6.4105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G113100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-091157346
                        SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                        +W+   d+l+ +a  ++ ++    +W++Ia+ ++ g+++ +++ ++ +
  Gorai.006G113100.1 11 AWSWHQDKLFERALVMFSNDessdRWEKIAAQVP-GKSAADVRRHYED 57
                        8*********************************.***********76 PP
2Myb_DNA-binding44.14.9e-14113157347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ + +++G+g+W++I+r     Rt+ q+ s+ qky
  Gorai.006G113100.1 113 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 157
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.212762IPR017884SANT domain
SMARTSM007171.3E-5861IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-91067IPR009057Homeodomain-like
CDDcd001673.96E-51155No hitNo description
PfamPF002491.7E-71157IPR001005SANT/Myb domain
PROSITE profilePS5129419.214106162IPR017930Myb domain
SuperFamilySSF466893.96E-17108163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17110160IPR006447Myb domain, plants
SMARTSM007172.3E-10110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12110156IPR009057Homeodomain-like
CDDcd001676.81E-9113158No hitNo description
PfamPF002491.2E-11113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MIRTNDDASS AWSWHQDKLF ERALVMFSND ESSDRWEKIA AQVPGKSAAD VRRHYEDLEH  60
DVLEIESGRI ELPSYEGELE SASWVNESGR SQVWVGSKGK ERERESERRK GVPWTEEEHR  120
LFLIGLQKYG KGDWRSISRN AVVSRTPTQV ASHAQKYFLR LNSVNEKNKK RSSIHDLKMG  180
DDNSMDPQSK FFNEQGSSFV NNHGYEFPLL *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5848724e-94JX584872.1 Gossypium hirsutum clone NBRI_GE18283 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485124.11e-154PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D2S1051e-153A0A0D2S105_GOSRA; Uncharacterized protein
STRINGGorai.006G113100.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2056656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-54MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]