PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G125700.1
Common NameB456_006G125700, LOC105799365
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 473aa    MW: 52928.9 Da    PI: 6.2024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G125700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS472.62.1e-144474691374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ +    see+ ++klf+e++P+l
  Gorai.006G125700.1  47 LIHLLLTCANHVANGSLENANIALEQISQLASPDGDTMQRMAAYFTEALADRILKAWPGLHKALNSTRIT--LLSEEILVRKLFFELFPFL 135
                         689*************************************************************999987..7****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k++++++NqaI ea+ege++vHiiD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++    +ke l ++++rL + Ae+l++pf+fn+ v
  Gorai.006G125700.1 136 KVAFVLTNQAIIEAMEGEKMVHIIDLNAAEPAQWVALIQALSARPEGPPHLRITGIHQ----QKEVLDQMAHRLIEEAEKLDIPFQFNP-V 221
                         **********************************************************....9**************************.6 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..........................................................d 215
                         + +le+l++++Lrvk+gEala+++vlqlh++l                                                          +
  Gorai.006G125700.1 222 VCKLENLDVDKLRVKTGEALAISSVLQLHSFLtsddellrkksplgsknlngihlqralqmnqstlgellekdmvngyspspdsasssplS 312
                         888*********************************************************************************8866544 PP

                GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                         +++s+  + d++L+++++lsPk++vv+eq+++hn+++++er+le+l+ y+alfd+ e++++r+s er kvE++l+g+ei+n++acegaer+
  Gorai.006G125700.1 313 STGSV--KVDSFLNALWGLSPKLMVVTEQDSNHNGSTLMERLLESLHSYAALFDCSESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERK 401
                         44444..469********************************************************************************* PP

                GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         erhe+lekW +rl+ aGF++vpls++ +  a++ll+ ++ dgy+++ee+g++v++W+drpL+svSaWr
  Gorai.006G125700.1 402 ERHEKLEKWIQRLDLAGFGTVPLSYYGMLHARRLLQGYNCDGYKMKEENGCIVICWQDRPLFSVSAWR 469
                         *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.52721449IPR005202Transcription factor GRAS
PfamPF035147.3E-14247469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MFQDESSSVT SSSSPLQVFS MMSLSPNLGS PYPWLRELKS EERGLYLIHL LLTCANHVAN  60
GSLENANIAL EQISQLASPD GDTMQRMAAY FTEALADRIL KAWPGLHKAL NSTRITLLSE  120
EILVRKLFFE LFPFLKVAFV LTNQAIIEAM EGEKMVHIID LNAAEPAQWV ALIQALSARP  180
EGPPHLRITG IHQQKEVLDQ MAHRLIEEAE KLDIPFQFNP VVCKLENLDV DKLRVKTGEA  240
LAISSVLQLH SFLTSDDELL RKKSPLGSKN LNGIHLQRAL QMNQSTLGEL LEKDMVNGYS  300
PSPDSASSSP LSSTGSVKVD SFLNALWGLS PKLMVVTEQD SNHNGSTLME RLLESLHSYA  360
ALFDCSESTV SRTSLERLKV EKMLFGEEIK NIIACEGAER KERHEKLEKW IQRLDLAGFG  420
TVPLSYYGML HARRLLQGYN CDGYKMKEEN GCIVICWQDR PLFSVSAWRC RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-42474694375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9083490.0DQ908349.1 Gossypium hirsutum clone LIB5327-014-A1-N1-G10_Gh410 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485346.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_016671727.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D2NRC70.0A0A0D2NRC7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I0F30.0A0A1U8I0F3_GOSHI; scarecrow-like protein 3
TrEMBLA0A2P5XQ890.0A0A2P5XQ89_GOSBA; Uncharacterized protein
STRINGGorai.006G125700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]