PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G132100.1

Common Name

B456_006G132100, LOC105797682

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 201aa MW: 23136.5 Da PI: 9.7973

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G132100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.7	6.4e-18	17	66	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ r ++fskRr gi KK +ELS+LC+ +++ iifs++gk y ++ Gorai.006G132100.1 17 KIIENEDDRLISFSKRRFGIYKKISELSTLCGCDILFIIFSPKGKPYSFA 66 579******************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.9E-25	9	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.142	9	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-24	10	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-21	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MASSSKKTRG KQKIEIKIIE NEDDRLISFS KRRFGIYKKI SELSTLCGCD ILFIIFSPKG 60 KPYSFAHPSI EAVTKRFLNP NQPLYETTDA LVEAYRKVRI KSLVQDYNEV HDQLDASKEK 120 QKAFFLAQQS RGSESHHWWK TPIYQLNPRE LHERDKHFAE FISLISVARD KKIASISSMH 180 AAMDEDLPFV VPSRYGLSLQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3kov_B	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3kov_I	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3kov_J	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3p57_A	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3p57_B	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3p57_C	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3p57_D	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3p57_I	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
3p57_J	2e-14	10	97	1	89	Myocyte-specific enhancer factor 2A
5f28_A	2e-14	10	97	2	90	MEF2C
5f28_B	2e-14	10	97	2	90	MEF2C
5f28_C	2e-14	10	97	2	90	MEF2C
5f28_D	2e-14	10	97	2	90	MEF2C
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483077.1	1e-148	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2RVK2	1e-146	A0A0D2RVK2_GOSRA; Uncharacterized protein
STRING	Gorai.006G132100.1	1e-147	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	4e-32	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.006G132100.1
Entrez Gene	105797682

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]