PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G137400.2
Common NameB456_006G137400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 214aa    MW: 22997 Da    PI: 9.0934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G137400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033148170223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp Cg  Fs+  +L+ H  + H
  Gorai.006G137400.2 148 ECPQCGAKFSSVTTLVDHVEKvH 170
                         5*****************99888 PP
2zf-C2H217.51.2e-05185207223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp+C+k F+++  L+ H  + H
  Gorai.006G137400.2 185 VCPKCSKGFRDPVALVEHVERdH 207
                         7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.105.9E-111165IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.32E-101262No hitNo description
PfamPF014281.0E-82161IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.951147175IPR007087Zinc finger, C2H2
SMARTSM003550.042147170IPR015880Zinc finger, C2H2-like
PfamPF138942.6E-4148170No hitNo description
SuperFamilySSF576677.66E-5148203No hitNo description
PROSITE patternPS000280149170IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-4151170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.85184212IPR007087Zinc finger, C2H2
SMARTSM003555.4184207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280186207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MHVNTECDPS NYDKVTKKKK CPVPGCREVL TFSNTIKCRD CTLDHCLKHR FGPDHKCPGP  60
KKSDPGFPFM GLLSRSRKES KTNQAPATSS SKWATSFLNA ASTVRASAEA GMTKLGSEIS  120
QKLQIARDGV GLSSSGGGSN GNAGQVEECP QCGAKFSSVT TLVDHVEKVH ERNNQSRVFK  180
MSIDVCPKCS KGFRDPVALV EHVERDHGGT SKA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485543.11e-155PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ425e-81SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0D2SXI91e-156A0A0D2SXI9_GOSRA; Uncharacterized protein
STRINGGorai.006G137400.11e-154(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.14e-81C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]