PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G140200.5

Common Name

B456_006G140200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 314aa MW: 34472.3 Da PI: 9.6416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G140200.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.6e-05	270	293	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el+P+ Gorai.006G140200.5 270 SIAERVRRTRISERMRKLQELVPN 293 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.816	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-5	267	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.35E-4	268	297	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-4	269	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDSSTPPSCQ NQNSQPNSEL LRFLSAPSSL LAPFSESLDT GLSKGGPHSD RLIYRFMNPS 60 QDKSGTEATV DHANSRQTFP GLPPHYPRQT SSAMDTSYFL LGMDPRCGKP GTSSLLRQSS 120 SPPGLFTNLS VQTGLGSYTN GELSPSSSNR LKNQISFSSR LPSSLGILSQ ISEIGDDAKL 180 GTGYQYGSWN DSANFPENFS GSKTTQDNDP NFFSANQNSD SGSRLHVLSH HLSLPKTSNE 240 TPAMEKFLSF QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKVWFR 300 LFFFPLSSSR FGN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485593.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X2
Swissprot	Q66GR3	6e-77	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0D2Q9U9	0.0	A0A0D2Q9U9_GOSRA; Uncharacterized protein
STRING	Gorai.006G140200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G140200.5

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]