PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G143600.2

Common Name

B456_006G143600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 23994.9 Da PI: 8.7496

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G143600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.2e-18	81	135	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Gorai.006G143600.2 81 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 135 778899***********************************************98 PP
2	HD-ZIP_I/II	129.2	1.7e-41	81	170	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l Gorai.006G143600.2 81 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-AL 170 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	3.5E-6	11	43	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	4.7E-18	64	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-19	70	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	77	137	IPR001356	Homeobox domain
SMART	SM00389	7.3E-16	79	141	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-15	81	135	IPR001356	Homeobox domain
CDD	cd00086	1.79E-15	81	138	No hit	No description
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
SMART	SM00340	7.2E-26	137	180	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.0E-11	137	171	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
METGSSDGRG RGLDVNRLAV VALGEEAEEG AALSSPNSAV SSFQVDFGFR NGSSRGKREV 60 EMETERGSSR ASDDDDNGST RKKLRLSKEQ SAFLEESFKE HNTLNPKQKL ALAKQLNLRP 120 RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRRL QKELQELRAL KASQPFYMQL 180 PATTLTMCPS CERVATTSTT ADGKNGLLPL TKTSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	85	TRKKLRL
2	129	137	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485645.1	1e-154	PREDICTED: homeobox-leucine zipper protein HAT14-like
Refseq	XP_016671464.1	1e-154	PREDICTED: homeobox-leucine zipper protein HAT14-like
Swissprot	P46665	8e-91	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A0D2Q9Z5	1e-155	A0A0D2Q9Z5_GOSRA; Uncharacterized protein
STRING	Gorai.006G143600.1	1e-154	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	7e-79	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Gorai.006G143600.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]