PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G153400.1
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 361aa    MW: 39532.1 Da    PI: 4.6586
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G153400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.92.3e-121152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        ien+s r  ++ kRr+g+ KK  EL +LC++e  ++i+ ++ 
  Gorai.006G153400.1 11 IENSSARRASLRKRRQGLVKKVTELTTLCGVEGGIVIYTKNE 52
                        9************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.082151IPR002100Transcription factor, MADS-box
CDDcd002661.39E-21285No hitNo description
SuperFamilySSF554551.57E-18493IPR002100Transcription factor, MADS-box
PfamPF003194.3E-131152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTGKRVKLAW IENSSARRAS LRKRRQGLVK KVTELTTLCG VEGGIVIYTK NEEEPIVWPS  60
REEMEQLLRK FNEIPEVERM KKSMNLETYY KGMISKSQDQ LRRETRKTKE MEVGQFMLQF  120
EQGKKLDDFS VNELDDMKWY METMRTDMGK LMEFYEKFPP SSVGPSQGDV PLPPPPPQGS  180
APLVGQNIGI ADAGVGDKDT FEDFPWEDPL NANTNNNYIR GSSLGGAGSS SLHQPRPSHD  240
GNSSIAPEPG LTGFSYGGNT SAAIEPRPPM PPFGYDSSSS VGTANPELPP FEPLSDDLLK  300
GDSLGPFDND MGPGHFPLGP LESSSPASDF GGNPLRFFGG ESSSHGAEGN RETGPFDDKN  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166631e-142JX616663.1 Gossypium hirsutum clone NBRI_GE61484 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483091.10.0PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLA0A1U8LU490.0A0A1U8LU49_GOSHI; agamous-like MADS-box protein AGL90
TrEMBLA0A2P5SAF40.0A0A2P5SAF4_GOSBA; Uncharacterized protein
STRINGGorai.006G153400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16953311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-23AGAMOUS-like 48