PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G153500.1
Common NameB456_006G153500, LOC105799656
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 391aa    MW: 42743.8 Da    PI: 6.3951
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G153500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.66.6e-131152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        ien+s r  ++ kRr+g+ KK  EL +LC++e  ++i+s + 
  Gorai.006G153500.1 11 IENSSARRASLRKRRQGLVKKVTELTTLCGVEGGIVIYSRNE 52
                        9**************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.778151IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-18160IPR002100Transcription factor, MADS-box
CDDcd002669.30E-26285No hitNo description
SuperFamilySSF554551.31E-19294IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MTRKKVKLAW IENSSARRAS LRKRRQGLVK KVTELTTLCG VEGGIVIYSR NEQEPIVWPS  60
REEVERLLRK FNEVPEVESM KRSMNLETYY KEMISKSQDQ LRKQNRKNKE MKVGQLMLQI  120
EQGKMPDDFN VNELDDLIWY GETMRTDIRK LMEFYEQFPS SSVGLTQGDA PLPPPPTQGR  180
APAVGQTIGI ANAGVGDKDT SEGFPWEDRL NSNTNTNYIR GEASSSIRRE MGLTYHNLFA  240
AATGDHVKLP GSSLGGVGSS SLQQPRPSHG GSSRIAPESG LTGFSYGGSS SAAIEPRPSM  300
PPFGYDSSSS VRTANPELPP FEPLRDDLLK GDNIGPFDND MGPGHYPLGP LESSSPASDI  360
GGNPLRFFGG ESSSHGAAGS RETGPFDDKN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWIENSSARRASLRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147610.0JX614761.1 Gossypium hirsutum clone NBRI_GE58390 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485783.10.0PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLA0A0D2SYF80.0A0A0D2SYF8_GOSRA; Uncharacterized protein
STRINGGorai.006G153500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16953311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-27AGAMOUS-like 48
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]