PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G168100.1
Common NameB456_006G168100, LOC105799803
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family S1Fa-like
Protein Properties Length: 91aa    MW: 10084 Da    PI: 10.1744
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G168100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA136.85e-432590570
                S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                        ++eakGlnPGlivllvv glll+flvgny+ly yaqk+lPPrkkkPvskkk+kre+lkqGv++PGe
  Gorai.006G168100.1 25 ETEAKGLNPGLIVLLVVLGLLLIFLVGNYVLYSYAQKTLPPRKKKPVSKKKMKRERLKQGVSAPGE 90
                        689**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.0E-402690IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAEESDFADK VPPSFYEMGN KIIYETEAKG LNPGLIVLLV VLGLLLIFLV GNYVLYSYAQ  60
KTLPPRKKKP VSKKKMKRER LKQGVSAPGE *
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486006.12e-58PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016671257.12e-58PREDICTED: DNA-binding protein S1FA-like
SwissprotQ7XLX64e-17S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D2NTY05e-57A0A0D2NTY0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HZ195e-57A0A1U8HZ19_GOSHI; DNA-binding protein S1FA-like
TrEMBLA0A2P5R7J25e-57A0A2P5R7J2_GOSBA; Uncharacterized protein
STRINGGorai.006G168100.18e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3681622
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]