PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G172000.2
Common NameB456_006G172000, LOC105799841
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 630aa    MW: 70085.1 Da    PI: 10.3253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G172000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.8e-08535584147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Gorai.006G172000.2 535 RRPFSVSEVEALVQAVEKLGTGRWRDVKLYAFdnaKHRTYVDLKDKWKTL 584
                         678999************************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.97E-5349420IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.575530589IPR017930Myb domain
SMARTSM007171.1E-7534587IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-10535585IPR009057Homeodomain-like
CDDcd116601.75E-16536586No hitNo description
SuperFamilySSF466896.93E-16536617IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MVSQTRLEYG FIGYQVPVFP RASRSARVRV PNRKKSGNNE KHAFEILVSV AGDFLQEGET  60
FVPPNCKKDQ QNACKNLVLK EQEDESQSSK CNLSDKETYN EKPLSGYHQI RTVNKFSHAP  120
DRFNLKPYSS LKGFDKLANV SGRNTNHSSE LGISSLISGE FSEGQFEDAG AELSIIQTVK  180
SETLQPTGSL DALEMDCKPP HYFCSGSKTS LSKDWTTLGP SRHSDTIETV SRDDNGNYVA  240
DQRIKNPSSS RRWRVSPNLN GGASFRNDGK RRKIFHDGRT SYSRQRSKRI SPLKRRDFFN  300
QCPISGSDRG FQLDDRFNSA ADKRGDGNNY CAAIRVASSV TSPHPHPGSR DRNVKLRIKS  360
FKVPELLVEI PTTATVGSLK RSVMEAVTTV LGDGLHVGIL LQGKKVRDDS KTLLQTGISR  420
DGKHCNLGFM LEPRHAQIKL PRCLGEQGIT SHATSFTLDP RTSSISLDPP VAGCINGARR  480
DHHLVPSLPN ISASTTPLPN SQSVVSVPAI SVEALAVVPI HHRAGRREFV QRRIRRPFSV  540
SEVEALVQAV EKLGTGRWRD VKLYAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV  600
PQELLDRVLA VHAYWSQQQA KQQQLKPGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-535196221104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288RQRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486053.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486054.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486055.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486056.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
RefseqXP_012486057.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X1
TrEMBLA0A0D2NU290.0A0A0D2NU29_GOSRA; Uncharacterized protein
STRINGGorai.006G172000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-105TRF-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]