PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G176000.1
Common NameB456_006G176000, LOC105797960
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 168aa    MW: 18736.8 Da    PI: 9.2615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G176000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-0587109123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg+ Fs    L  H+r+H
  Gorai.006G176000.1  87 HECSICGQEFSMGQALGGHMRRH 109
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-938109No hitNo description
PfamPF139125.3E-113863IPR007087Zinc finger, C2H2
SMARTSM003551.13961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5363966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-485109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-1186111IPR007087Zinc finger, C2H2
SMARTSM003550.06287109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.15987114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRERESVEI QGFDIAKCLM LLSQGLQTKP KEHSVSEVFE CKTCHRCFPS FQALGGHRAS  60
HKRPKLMGDK PNETTQFLSL STKPKTHECS ICGQEFSMGQ ALGGHMRRHR AAMNESFSPF  120
PLVPTVPVLK RSNSSRRVVC LDLNLTPLEN DLQVLFGNKA PKVDLCI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483277.11e-121PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD48e-52ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0D2NU751e-120A0A0D2NU75_GOSRA; Uncharacterized protein
STRINGGorai.006G176000.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-54C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]