PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G184400.1

Common Name

B456_006G184400, LOC105799970

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 528aa MW: 59310.7 Da PI: 4.4478

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G184400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	137.3	1.6e-42	159	523	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL + ea ++++ ela+ +L + e asp g++ +R+a+ + ++ ++++++ l ++e+ s++ aa+++f++v+P+ +f Gorai.006G184400.1 159 HLLKAYGEATEKNQSELAEVILRCVGEKASPVGETWERIAFNL----SQDIQHQSDYL-----MQES----SKNFEAAFRVFYQVFPYWRF 236 7888889999****************************975....55566522222.....2233....56788999******** PP GRAS 94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180 +h++aN+aIlea+ ++ +++Hi+Df+i++GlQWp+ ++aLa + s+R+T + +e++ s + + t ++L + A+++g+++e + Gorai.006G184400.1 237 AHFAANSAILEAMPNDaDTLHIVDFNIGEGLQWPPVIEALAWKH---KSMRLTSIRWEEEDsahSPWRFKGTMRQLCNHAKSFGLKLEVEE 324 *********999899******************985...56**99888877788899****************99 PP GRAS 181 lvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqe.adh..nsesFl 254 + ++dl ++eL++k+ gE la n+++ + + + ++ + e+L++ k++ + v+++ + + ++ + + F Gorai.006G184400.1 325 M---GIHDL-VNELKMKKrggaGEWLAFNCMVGMGKGK--RRKIVN---EFLNVAKEVLASsgnyfardrgVITFGDGDaCEKlkDCSGFG 406 7...88888.899999999999******999886..444444...7888888875533333333455999999995444456679 PP GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 + f l +y a+++s+e++++++ ++r+ +E ++g++i+ ++ + +++ + ++ +++s++ ++ak ++r+ Gorai.006G184400.1 407 TFFNGQLMHYQAVLESMESNFAKHLvQARMAMECLFVGPNICGQAWLQKWKEINEIC---DFDA---GTALEGLRVSSERLMEAKEIVRER 491 ******************998888***********8765555555222222...2222...234567889**********9 PP GRAS 345 ksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 + ++v + ++l l W++++Lv vS+Wr Gorai.006G184400.1 492 D-TLFEVSiggVSGNELALEWRGNTLVRVSSWR 523 9.5588887778899***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.537	131	527	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-40	159	523	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MMQSDNFPPS SWPFESFLNS SIDQLEVQPY GLNMSENFDG CEFSSSFNTR EDSPEISHFS 60 TMVSGEIFPC NDHLQEFLVP LEGLESMLTD GIEDLYDCLD EGEDSFGSMM PLSSQSQDVC 120 SPSASIRSSE ASADMTSTQS SLTLPGDSME IDNQLSLFHL LKAYGEATEK NQSELAEVIL 180 RCVGEKASPV GETWERIAFN LSQDIQHQSD YLMQESSKNF EAAFRVFYQV FPYWRFAHFA 240 ANSAILEAMP NDADTLHIVD FNIGEGLQWP PVIEALAWKH KSMRLTSIRW EEEDSAHSPW 300 RFKGTMRQLC NHAKSFGLKL EVEEMGIHDL VNELKMKKRG GAGEWLAFNC MVGMGKGKRR 360 KIVNEFLNVA KEVLASSGNY FARDRGVITF GDGDACEKLK DCSGFGTFFN GQLMHYQAVL 420 ESMESNFAKH LVQARMAMEC LFVGPNICGQ AWLQKWKEIN EICDFDAGTA LEGLRVSSER 480 LMEAKEIVRE RDTLFEVSIG GVSGNELALE WRGNTLVRVS SWRNTQL*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MMQSDNFPPS SWPFESFLNS SIDQLEVQPY GLNMSENFDG CEFSSSFNTR EDSPEISHFS  60
TMVSGEIFPC NDHLQEFLVP LEGLESMLTD GIEDLYDCLD EGEDSFGSMM PLSSQSQDVC  120
SPSASIRSSE ASADMTSTQS SLTLPGDSME IDNQLSLFHL LKAYGEATEK NQSELAEVIL  180
RCVGEKASPV GETWERIAFN LSQDIQHQSD YLMQESSKNF EAAFRVFYQV FPYWRFAHFA  240
ANSAILEAMP NDADTLHIVD FNIGEGLQWP PVIEALAWKH KSMRLTSIRW EEEDSAHSPW  300
RFKGTMRQLC NHAKSFGLKL EVEEMGIHDL VNELKMKKRG GAGEWLAFNC MVGMGKGKRR  360
KIVNEFLNVA KEVLASSGNY FARDRGVITF GDGDACEKLK DCSGFGTFFN GQLMHYQAVL  420
ESMESNFAKH LVQARMAMEC LFVGPNICGQ AWLQKWKEIN EICDFDAGTA LEGLRVSSER  480
LMEAKEIVRE RDTLFEVSIG GVSGNELALE WRGNTLVRVS SWRNTQL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-15	165	522	26	377	Protein SCARECROW
5b3h_D	8e-15	165	522	26	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486251.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0D2T081	0.0	A0A0D2T081_GOSRA; Uncharacterized protein
STRING	Gorai.006G184400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	2e-18	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G184400.1
Entrez Gene	105799970

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]