PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G190600.1

Common Name

B456_006G190600, LOC105800038

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 177aa MW: 19875.2 Da PI: 8.325

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G190600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	84.3	1.4e-26	10	59	5	57
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ + +++ ++l+CaACgCHRnFHR+ + Gorai.006G190600.1 10 LYRECLRNHAASLGSYATDGCGEFTLD---HTSLSTLQCAACGCHRNFHRKVS 59 5***********************8...6689**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.4E-23	10	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-23	11	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.849	11	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-17	11	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	93	160	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.94E-15	93	158	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.1E-29	100	158	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MEKEYPSCDL YRECLRNHAA SLGSYATDGC GEFTLDHTSL STLQCAACGC HRNFHRKVSY 60 CNSNSRSRGD PVERVDYGDD GGRPPVLLEY STEAGARSGK KRFRTKFTAE QKEKMLEFAE 120 KLGWRLQRRD EEDQVDKFCR GIGVSRQVFK VWMHNHKNTS TASSVSTCNA SSLTTP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-22	101	163	18	79	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486371.1	1e-131	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q9SB61	1e-39	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A0D2S608	1e-130	A0A0D2S608_GOSRA; Uncharacterized protein
STRING	Gorai.006G190600.1	1e-130	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18527	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-42	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Gorai.006G190600.1
Entrez Gene	105800038

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]