PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G192400.1
Common NameB456_006G192400, LOC105800059
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 245aa    MW: 27157.3 Da    PI: 9.5635
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G192400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-1473120148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++ Ed++l d++ ++G g+W++ ++  g+ R++k+c++rw +yl
  Gorai.006G192400.1  73 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAGLLRCGKSCRLRWVNYL 120
                         79******************************99************97 PP
2Myb_DNA-binding513.4e-16126168145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+
  Gorai.006G192400.1 126 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTENEVKNHWN 168
                         89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.13268120IPR017930Myb domain
SuperFamilySSF466892.27E-2672167IPR009057Homeodomain-like
SMARTSM007171.8E-1072122IPR001005SANT/Myb domain
PfamPF002495.4E-1373120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2074127IPR009057Homeodomain-like
CDDcd001672.11E-875120No hitNo description
PROSITE profilePS5129426.074121175IPR017930Myb domain
SMARTSM007174.3E-15125173IPR001005SANT/Myb domain
PfamPF002497.8E-15126168IPR001005SANT/Myb domain
CDDcd001676.03E-11128171No hitNo description
Gene3DG3DSA:1.10.10.606.0E-24128175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQSVTNPTAG SRKSSHGSWG QTQTLVYIYI LLVSLFISPP LPLLWSVAFA CLNSLPLGLQ  60
MRKPCCEKKD TSKGAWSKLE DQKLTDYILK HGEGCWRSLP QAAGLLRCGK SCRLRWVNYL  120
RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTE NEVKNHWNIH LRKKLLMMGI  180
DPNNRRSLLS PTLTKSNASN DSSSACQPFN PATASETISS TCLPDLNLDL TIAPPLSHQN  240
LALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25701754108B-MYB
1h8a_C3e-257017524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591652e-65AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486405.11e-179PREDICTED: myb-related protein 308-like
SwissprotP813933e-74MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0D2S6461e-178A0A0D2S646_GOSRA; Uncharacterized protein
STRINGGorai.006G192400.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-72myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]