PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G196500.1

Common Name

B456_006G196500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 230aa MW: 25636 Da PI: 7.7608

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G196500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.5e-11	56	108	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr+llP ++K ++ Av Y+k+Lq Gorai.006G196500.1 56 KKSMHRDIERQRRQEMSTLYASLRTLLPLeY---IKGKRAISDHMNGAVSYVKDLQ 108 6899***********************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.02E-10	53	111	No hit	No description
SuperFamily	SSF47459	7.46E-13	54	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.09	55	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-8	56	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-10	56	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDEMFFHFSS GSDPQNTIPH DEILDYVPMG GSSSRGRQRK LLSTEKRENS NADDKKKSMH 60 RDIERQRRQE MSTLYASLRT LLPLEYIKGK RAISDHMNGA VSYVKDLQKR IDGLNAKRDE 120 LKKASDNWSG FEQGMTSNEA FPSSAVVRQS LDGVEVVIST SVGPKALTLS RVLQLLLEEG 180 LDVVNCITTR IDGGLIHTIQ TEVSDLRGVH VPYLEQKLNK VISSLSQTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670893.1	1e-167	PREDICTED: transcription factor bHLH126-like
Swissprot	Q9STJ6	2e-47	BH126_ARATH; Transcription factor bHLH126
TrEMBL	A0A0D2S5Z0	1e-168	A0A0D2S5Z0_GOSRA; Uncharacterized protein
STRING	Gorai.006G196500.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	7e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G196500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]