PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G203800.1
Common NameB456_006G203800, LOC105800178
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 542aa    MW: 60544.8 Da    PI: 4.673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G203800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1744.5e-5491371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptdeel+++yL+ k++g+++++ e+i+e+d++k+ePwdLp  +++k+++ ew+fF++ d+ky+tg+r nrat++gyWkatgkd
  Gorai.006G203800.1   9 LPLGFRFRPTDEELIHFYLRSKINGNRNDEIEIIREIDVCKCEPWDLPdlSAIKTQDPEWFFFCPLDRKYPTGNRLNRATEAGYWKATGKD 99 
                         699************************999999**************96448888999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++s +++l+g+kktLvfy+grap+g++t+Wvmheyr 
  Gorai.006G203800.1 100 RKIKS-GSTLIGMKKTLVFYNGRAPRGKRTNWVMHEYRT 137
                         *****.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-606160IPR003441NAC domain
PROSITE profilePS5100557.6589160IPR003441NAC domain
PfamPF023652.3E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGVLLLNSLP LGFRFRPTDE ELIHFYLRSK INGNRNDEIE IIREIDVCKC EPWDLPDLSA  60
IKTQDPEWFF FCPLDRKYPT GNRLNRATEA GYWKATGKDR KIKSGSTLIG MKKTLVFYNG  120
RAPRGKRTNW VMHEYRTTLD ELDGTKPGQN AFVICRIFKK QDETIEDINS DEVDPSVLSP  180
TEDMASELEV PQASPTVKQE AEKACDTSET CFASFPDEVI SNAVAPIFEG NSDNHDNYNE  240
IDQVAEISPA EVDLLEEALN HFYDPMMEPL FSPLHNQIEA EQAPWMFDHV GNCYNVEFGH  300
GTNENDPYIS NFLESILKNS DDYHGDDTGS QKNSESETHT TMTIGKDGGF CSKPDSEVAQ  360
VLLGTDTVNG VPPIGTAQDC GIPNSDAELF SNHMNTSCDI DGAITGIRTR SRPSRSQLDS  420
ENPLAQGNAS RRLRLQCKLQ VHSLHCDNAI YNRSDVEIED DSKSVVTKEE KVVEKDITVG  480
CNADFGIVLG SKTIVSVRKE TSSRWSKVFS VHHSRKPFAV VFRVAVMLIL FIVLISTPKA  540
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42816314171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.37140.0flower|seedling| flowering
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472080.0KC847208.1 Gossypium hirsutum NAC domain protein NAC31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313704.10.0NAC domain-containing protein 62-like
RefseqXP_012486606.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A0D2NVU50.0A0A0D2NVU5_GOSRA; Uncharacterized protein
TrEMBLW6JEY70.0W6JEY7_GOSHI; NAC domain protein NAC31
STRINGGorai.006G203800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-90NAC domain containing protein 62
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]